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  I'm attempting to use the liftover function on usegalaxy.org, but no matter which file I use, the...
• de novo assembly
  Hi folks I would like to use de novo assembly and quantification for mink RNA-Seq data. I am won...
• what type of library to choose in set advanced cufflink option
  hi i have performed QC then groomer then tophat on SRA sequences which were single end. now i wa...
• Upload file to Galaxy local instance
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• I can't choose a "reference transcriptome"
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• Cip adapters with FASTX Galaxy
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• Galaxy Cluster Nodes From The Cloudlaunch Site
  Dear Galaxy users, I created galaxy instance using galaxy ami the first time. When I re- launch ...
• illumina PE quality control - NGS: QC & Manipulation
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• About Adding Tools
  Hi, I'm looking at how to add tools to galaxy. Is there any info on what the tool.xml can have w...
• Help! I'm using trimmomatic in Galaxy, but it doesn't recognize a part of input dataset.
  I'm using Trimmomatic to trimming paired end reads. When I set "Single-end or paired-end reads?"...
• Tools Xml Option 'From_File'
  Hi, I'm trying to add blast (or megablast actually) to galaxy. To allow it to use databases, I n...
• FastQ to annotated MACS Peaks
  Hello I'm a Ms Student, and I'm am completely new to galaxy. Since 4 days I'm am trying to lear...
• Shutting Down Galaxy Instance on AWS
  I'm sorry for such a naive question, but I'd like to simply shutdown my Galaxy server on AWS. I'm...
• Using Sge Cluster
  Hi, I'm trying to get SGE cluster to run some tools on galaxy. I've set the 'start_job_runners =...
• bacterial complete nt database to apply blastn
  Hi all, the present question has been many times addressed but I failed to find any definitive a...