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• sequencing adapter trim
  I'm trying to trim the adapters from sanger/illumina sequences in Galaxy. The adapter selection m...
• Nextera pair end adapter cleaning
  Can I use Nextera pair end adapter option in Galaxy Trimmomatic program for cleaning my illumina ...
• how can I use a custom adapter sequence in trimmomatic while in Galaxy?
  Hi, I want to use a custom adapter sequences in trimmomatic. But when I upload a fasta file, the...
• Cutadapt I don't see my list of adapter
  Hello, I have a problem with Cutadapt, I would like use a list of adapter, I have copied my list...
• How do i remove multiple adapter sequences from my RNAseq reads?
  Hi there, I want to remove the universal adapters as well as the index adapters in each data fil...
• Trim Adapters And Other
  Hi, all! I have a maybe naive question that might be not so related to Galaxy usage. So I got th...
• Trim Galore version - Adapter sequence
  Hello, I have been using Galaxy's Trim galore for clipping adapters from Illumina small RNA sequ...
• Cutadapt with option of using adapter Fasta file
  Hi, The cutadapt tool available in the galaxy tool shed only allows for the manual input of the ...
• Removing 5' Adapters from Reads
  Is there a way to remove 5' adapters using Trim Galore? I know that cutadapt has this capability,...
• How To Clip Multiple Adapter Sequences In Penn State Galaxy? Thank.
  Hi All, In " Clip adapter sequences" option of Penn State Galaxy, I choose "Enter custom sequenc...
• How To Clip Multiple Adapter Sequences In Penn State Galaxy? Thank.
  Hi All, In " Clip adapter sequences" option of Penn State Galaxy, I choose "Enter custom sequenc...
• What is the sequence of Illumina Universal Adapters?
  I am currently analyzing RNA-seq data. I would anyways be trimming the adapters. However, it woul...
• galaxy tools NGS data analysis
  Is there any video/article available for a step by step processing of raw files received after NG...
• how to identify the adapter sequence?
  After getting the FastQc reports, which report can I use to know the adapter sequence used in the...
• Cutadapt need adaptor sequence input
  I use cutadapt on galaxy to trim my adaptors for my fastq files. Does the program find a default ...
• CutAdapt Batch Mode Input for 3' and 5' Adapters
  Hi, I'm currently using the CutAdapt tool on Galaxy to remove adapter sequences from fastq-forma...
• Clip Adapter Sequence
  Good morning, I am very new in using Galaxy. I would like to use Clip to remove the adapter sequ...
• Adapter and quality trimming using Trim Galore integrated Galaxy
  Hello. I need to make adapter trimming and quality trimming for my FASTQ paired files. I work in ...
• Trimming And Thinning Of Paired-End Reads
  Hi galaxy users, I've been experiencing some problems trimming the adapters and filtering by qua...
• trimming adapter sequences. is it necessary?
  Hi, I am a beginner to chip-seq analysis using Galaxy. I have received my data and did fastqc qua...
• Trimming
  Does anyone know if it is possible to trim sequencing adaptor sequences away in Galaxy? and what ...
• Multiplex Data
  Hi, I've several questions regarding multiplex data and its analysis. First, I'm using a MiSeq ru...
• adding illumina adapter sequences to local galaxy installation for use with trimmomatic
  Hi Having fun setting up local galaxy. Does anyone have a guide to adding illumina adapter seq...