the present question has been many times addressed but I failed to find any definitive and satisfying answer.
I'm trying to run blustn from Galaxy. I'm interested in finding bacterial contaminants within my contigs.
Which is the most effective and easier way to create such a complete db? I suppose makeblastdb should work fine,
but if it is the case, where can I download data for all bacteria? And then, should I need to download assemblies or
And where to find complete database to use with blastp?
Thanks a lot for any hint you will provide