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Question: Upload Jatropha Reference genome for Bowtie2
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gravatar for anoopanandmalik
2.1 years ago by
anoopanandmalik • 0
anoopanandmalik • 0 wrote:

Hi Team Galaxy,

I would kindly request you to upload Jatropha curcas reference genome in Galaxy online so that I can proceed for further alignment. The link for latest reference genome is mentioned below:

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000696525.1_JatCur_1.0/

The total size of this file is approx 121 MB. Please do the needful as soon as possible.

Thanks and regards

Anoop Anand Malik

The Energy and Resources Institute (TERI)

India
bwa alignment bowtie galaxy samtools • 658 views
ADD COMMENT • link •
modified 2.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.1 years ago by anoopanandmalik • 0
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gravatar for Jennifer Hillman Jackson
2.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Try the Custom Genome feature to use this genome immediately with nearly all tools. This is how: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Best, Jen, Galaxy team
ADD COMMENT • link modified 2.1 years ago • written 2.1 years ago by Jennifer Hillman Jackson ♦ 25k
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