I'm work on differential gene expression. I do have Tophat and cuff link files. I'm not able to generate plot correlation. It needs Heatmap file, how to generate Heatmap file via tophat or cufflinks,
When I am directly loading a paired end sequencing sra file in Galaxy with its SRA acession , its not generating two bam files by deafult!
Please post your question as brand new question, instead of a reply/comment added to another distinct question. If you ever want to reference another post to add context, the link to it can be included.
Thanks, Jen, Galaxy team
FYI for others: This sub-issue was resolved through email using by explaining the appropriate NCBI SRA retrieval tool (and explaining usage, also available on those tool forms). -Jen