Question: Read count across interval
0
michael.ridley6 • 0 wrote:
Hello, I'm trying to retrieve a score for ATAC-seq (similar processing to ChiP-seq data), at an interval. The closest I can get is the tag coverage, however this does not correlate with wiggle files, presubably because the intervals are <300bp and the tags are shifted either side of the strand (this is single end sequencing).
Is there a way to get a either a shifted tag count, or extract data from a wiggle file over an interval?