Question: Question Please -Manhattan Plots
0
Sagi • 10 wrote:
Dear sir,
I was looking through your Galaxy Wiki, but could not find an answer
to my
question. I would most appreciate any help regarding the following
issue:
I'm conducting a GWAS study in horses. Up until now I've been using
PLINK
for my association analysis, and now I wish to generate a Manhattan
plot.
I've been looking through your online version of Galaxy-Tool under
SNP/WGA:
QC; LD; Plots <http: main.g2.bx.psu.edu="" root="" tool_menu#=""> -->
Manhattan/QQ:<http: main.g2.bx.psu.edu="" tool_runner?tool_id="rgManQQ1">
link,
and I've read all the instructions. I think I have an appropriate file
ready
to run this on your online version, but I was hoping you can send me
an
example file of how exactly the data should look like (and not just
brief
explanations about the syntax), and in what format exactly should I
upload
it? If you have a tutorial about this, even better.
Many thanks!
Sincerely,
Sagi Polani
Molecular Evolution Lab
Koret School of Veterinary Medicine
The Hebrew University of Jerusalem
Israel
