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Question: plotProfile/plotHeatmap - How to change the file names?
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gravatar for alice.wenger
12 months ago by
alice.wenger • 0
alice.wenger • 0 wrote:

I would like to compare H3K4me3 ChIP peaks of several samples at TSS. Therefore, I used "compute matrix" and then "plot profile" or "plot heatmap". The sample names in the plots are "file_0", "file_1", "file_2" etc. How do I know which sample is which one and how can I change the names? Are they ordered according to the number in my galaxy history?

Thanks for your help.
chip-seq • 369 views
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modified 11 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by alice.wenger • 0
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gravatar for Jennifer Hillman Jackson
11 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Yes, these are in the same order as originally entered on the tool form. You can click on the "i" View Details for the job to access this ordering.

Some discussion around improving how the data could be named more informatively is tracked in this ticket for a future tool update: https://github.com/galaxyproject/galaxy/issues/4654

Good question, thanks! Jen, Galaxy team
ADD COMMENT • link written 11 months ago by Jennifer Hillman Jackson ♦ 25k
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