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• adding trimmomatic tool to galaxy
  Kindly let me know how to add trimmomatic tool to galaxy. I tried to do it through galaxy toolshe...
• Upload More Than 2Gb Data From Local Computer To Local Installation Of Galaxy
  Hi, I am unable to upload more than 3 GB data from local computer to local installation of galaxy...
• Trimmomatic on Galaxy
  Hi, How do i use trimmomatic on Galaxy? It only detects one read instead of two. I followed ever...
• How to install samtools from shed_tool on local galaxy
  Hi, would you like to show my detailed information to install samtools on local galaxy. The step ...
• how can I use a custom adapter sequence in trimmomatic while in Galaxy?
  Hi, I want to use a custom adapter sequences in trimmomatic. But when I upload a fasta file, the...
• Galaxy-using trimmomatics with ChIP seq pair ended (only one file with both reads)
  I am trying to run Trimmomatics in Galaxy under "pair end (as collection)" for afastqsanger.gz ...
• Local Directory
  I installed Galaxy on my own linux machine. I would like to perform analysis on local RNAseq file...
• "When available, install externally managed dependencies (e.g. conda)? Beta" is nowhere to be found. How to fix?
  I believe I'm running the latest version of Galaxy Project, as I installed it from the site last ...
• Add NCBI BLAST
  I am new to galaxy. I did not configured my galaxy on any local machine. I want to add NCBI BLA...
• Reference Genomes do not exist in local Galaxy's Bowtie2
  Want to use reference Genome hg19 for Bowtie2 from a local instance of Galaxy. The pulldown for s...
• administrator profile in local galaxy not working
  I have installed galaxy locally in my workstation. Basic instalattion seems to work properly, but...
• adding illumina adapter sequences to local galaxy installation for use with trimmomatic
  Hi Having fun setting up local galaxy. Does anyone have a guide to adding illumina adapter seq...
• Help! I'm using trimmomatic in Galaxy, but it doesn't recognize a part of input dataset.
  I'm using Trimmomatic to trimming paired end reads. When I set "Single-end or paired-end reads?"...
• Trimmomatic tool is not visible in the workflow editor
  Hi, I have a local galaxy instance and have installed many tools from the galaxy tool shed. Rece...
• Local Galaxy Sending Job Error
  Hi, I am relatively new to Galaxy. I am using Galaxy as a local. I installed tools via admin Tool...
• How to change label id within integrated_tool_panel.xml for local galaxy instance?
  Hi, I am running a local galaxy instance. I recently installed multiple tools within this instan...
• Running Trimmomatic on loop for Paired End
  I'm need to do trimming for Paired End. Is there any way around where I can run the trimmomatic ...
• Tools not installing in local galazy
  I'm trying to get galaxy running locally but when I try to install new tools the dependencies don...
• Need help with "Clip" tool
  hi, i have a question about this tool i heard that galaxy has 'trimmomatic' tool. But i can't f...
• Galaxy Local Install Problems Understanding Where To Put Mouse Ref Seq Data To Populate Ref Genome In Bwa
  Hello, I am still having problems understanding how to install mm9 mouse ref genome into our own...
• How do i remove multiple adapter sequences from my RNAseq reads?
  Hi there, I want to remove the universal adapters as well as the index adapters in each data fil...
• fetch genome all fasta tool not found in tool shed
  Greetings, I am looking for the fetch-genome-all-fasta tool to install it on local instance of g...
• ftp upload galaxy local
  Hi, I installed Galaxy locally on my laptop (working on ubuntu 14.04) following these instructio...
• what is "your galaxy path" ????
  HI guys, I am running my local Galaxy on Ubuntu 16.04. Actually, everything is OK but **such an u...