Upload More Than 2Gb Data From Local Computer To Local Installation Of Galaxy

Question: Upload More Than 2Gb Data From Local Computer To Local Installation Of Galaxy

4.8 years ago by

do kadya • 130

do kadya • 130 wrote:

Hi, I am unable to upload more than 3 GB data from local computer to local installation of galaxy. How can I do that ? I saw many of the tutorials which says about online upload. My Galaxy is running on 127.0.0.7:8080 I tried FileZilla to upload file, but its says "Connection established, waiting for welcome message" and after some time

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modified 3.0 years ago by xunshengbu • 30 • written 4.8 years ago by do kadya • 130

How can I create ftp for my local computer to upload data for local galaxy installation ? For current I may can use normal text upload but if I am having 10-20 GB file then I will need FTP upload. Waiting for positive reply. Hi, Error: Connection timed out Error: Could not connect to server Status: Waiting to retry... Status: Connecting to 127.0.0.1:8080... Status: Connection established, waiting for welcome message...

ADD REPLY • link written 4.8 years ago by do kadya • 130

4.8 years ago by

Bjoern Gruening ♦ 5.1k

Germany

Bjoern Gruening ♦ 5.1k wrote:

Hi Do, If you are running a loacl instance and you are admin you can use the data library and upload or even better link your data into a data library. https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFil es Cheers, Bjoern

ADD COMMENT • link written 4.8 years ago by Bjoern Gruening ♦ 5.1k

Hello, Björn is exactly right. Link the data to Galaxy as described on the wiki page he posted. If you want to run FTP server with Galaxy (it is not included by default) you have to install and configure it yourself. Here is a wikipage that will show you how to do it. https://wiki.galaxyproject.org/Admin/Config/Upload%20via%20FTP However if you plan to work with such large files on local machine you might easily end up having to wait for a loooooong time, depending on what you plan to do with it and what are specifications of the machine. Consider cloud (https://wiki.galaxyproject.org/CloudMan) or public instance ( usegalaxy.org). Martin

ADD REPLY • link written 4.8 years ago by Martin Čech ♦♦ 4.9k

3.0 years ago by

xunshengbu • 30

United States

xunshengbu • 30 wrote:

To upload files > 2G without FTP

1. Put files into /var/www/html or any of your web folder.

2. Get the links to the files.

3. Paste links to the upload tool of galaxy. Add a space after the pasted links if the input file size is zero or none.

4. Upload.

ADD COMMENT • link written 3.0 years ago by xunshengbu • 30

this is correct, if you make your files web accessible Galaxy can fetch it herself

ADD REPLY • link written 3.0 years ago by Martin Čech ♦♦ 4.9k

Hi, could you please explain in detail how I can achieve this? I don't know what a web folder is or where to find such a thing. I'm running Windows 7. Thank you!

ADD REPLY • link modified 2.8 years ago • written 2.8 years ago by niallcello • 0

This solution is good only for specific cases. For uploading to remote Galaxy use FTP and for uploading to local Galaxy use Library import. Both described above.

ADD REPLY • link modified 2.8 years ago • written 2.8 years ago by Martin Čech ♦♦ 4.9k

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