Question: Galaxy Local Install Problems Understanding Where To Put Mouse Ref Seq Data To Populate Ref Genome In Bwa
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Christopher Callaway • 40 wrote:
Hello,
I am still having problems understanding how to install mm9 mouse ref
genome into our own install of Galaxy. When I try to map with BWA for
Illumina the drop down for select ref genome is not populated with
anything. How do you grab the mm9 ref file and how do you convert it
so that Galaxy local "sees" it? How do you build the index and how do
you prepare the loc file? Our install does not contain a folder tool-
data/shared/ucsc/builds.txt.
Sorry but I am not a programmer, just a bench scientist.
Thanks in advance,
Christopher W. Callaway
University of Utah
Dept. of Pediatrics
Division of Neonatology
417 Wakara Way
#2222
Salt Lake City, UT 84108
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modified 7.1 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
7.1 years ago by
Christopher Callaway • 40
