Question: Running Trimmomatic on loop for Paired End
gravatar for tejokarthikp
5 months ago by
tejokarthikp0 wrote:

I'm need to do trimming for Paired End.

Is there any way around where I can run the trimmomatic on loop in galaxy without giving input each time

rna-seq trimmomatic • 321 views
ADD COMMENTlink modified 5 months ago by Jennifer Hillman Jackson25k • written 5 months ago by tejokarthikp0
gravatar for Jennifer Hillman Jackson
5 months ago by
United States
Jennifer Hillman Jackson25k wrote:


If I understand the goal correctly, please see the items below to aid with batch analysis.

  • Dataset collections: Simple through complex data structures that can optionally include extended metadata to keep an analysis organized.
  • Workflows and Sub-workflows: Analysis "recipes". Allows one to set the inputs once (at the start) and launch a full analysis pipeline in one step.

  • Galaxy API: Run Galaxy analysis line-command, by itself, or as part of a larger computational/data management strategy. All Galaxy results will still be available in the GUI, should you choose to host/share the web server.

The Galaxy ecosystem:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 5 months ago by Jennifer Hillman Jackson25k
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