Question: Error message: This job was terminated because it used more memory than it was allocated
0
gravatar for elena.bacchelli
21 months ago by
elena.bacchelli0 wrote:

Hi, 

I'm processing exome data (enriched with Nextera kit) in Galaxy. After mapping the reads using BWA-MEM and having sorted the BAM file using with Picard, I'm now trying to run Picard in order to mark and remove PCR duplicates, but I always get this error: "This job was terminated because it used more memory than it was allocated". Could you help me?

Thank you!!

markduplicates galaxy picard • 648 views
ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson23k • written 21 months ago by elena.bacchelli0
0
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello Elena,

Section 2.8 of the Galaxy support wiki explains alternatives for working with data/jobs that exceed the compute resources at http://usegalaxy.org:
https://wiki.galaxyproject.org/Support

Thanks for using Galaxy, Jen, Galaxy team

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson23k
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