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Question: Cannot allocate vector
1
gravatar for navid.fr
2.9 years ago by
navid.fr • 10
navid.fr • 10 wrote:

hi, I tried using a VCF DPC tool to a data from my history. When I run the tool I get the error message that: Error: cannot allocate vector of size 4.9 Gb Execution halted

 

I have no idea what I should do to fix it. I have tried a lot of things and no luck. I would appreciate any help. 

 

Best,
allocate dpc memory vcf • 820 views
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modified 2.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.9 years ago by navid.fr • 10
0
gravatar for Jennifer Hillman Jackson
2.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

It sounds like the tool is running out of resource. Click on the green bug icon to see if the full error message indicates this. You do not need to submit bugs that are explained in the wiki (see below) - but can still always use the green bug icon to investigate errors. Should the error remain unclear, please go ahead and submit the bug report along with a link to this post for more feedback.

Section 2.8 of the Galaxy support wiki explains alternatives for working with data/jobs that exceed the compute resources at http://usegalaxy.org:
https://wiki.galaxyproject.org/Support

Thanks for using Galaxy, Jen, Galaxy team
ADD COMMENT • link written 2.9 years ago by Jennifer Hillman Jackson ♦ 25k
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