I have over 600 ab1 files generated by sanger sequencing. they represent different splicing forms across herpes virus genome. what is the best way of mapping them on the genome and visualizing them?
The sequences need clipping too, as they all have bits from the vector sequenced with them.
I have tried usual tools available for sanger sequencing. but they are not able to map the files on the genome because of the splicing site in the middle of the genome.
Many thanks for your help and advise.