Question: edited workflow not saved
0
gravatar for rosm
2.8 years ago by
rosm0
Switzerland
rosm0 wrote:

I have been trying to edit one of my workflows.  I can do the modifications but then I cannot save the changes. When saving I get a Server error: Duplicate workflow outputs with name [html_file] found

 

 

software error • 748 views
ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by rosm0
0
gravatar for Dannon Baker
2.8 years ago by
Dannon Baker3.7k
United States
Dannon Baker3.7k wrote:

Is this on usegalaxy.org?  If so, would it be possible to share the workflow and describe the changes you're trying to make?  My galaxy user is 'dannonbaker@me.com'.

ADD COMMENTlink written 2.8 years ago by Dannon Baker3.7k

Hi Dannon,

I'm getting the same error on our local Galaxy. This started occurring right after our update tot 16.01. When I try to save the offending workflow the UI keeps hanging on the "saving workflow" notification. Galaxy logs tell me there is some kind of issue with the versions of the tools in the workflow:
 

galaxy.workflow.modules DEBUG 2016-02-10 14:12:32,050 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.63: using version 'Unspecified' instead of version '0.63' specified in this workflow.

 

Hope this helps in resolving the issue.
Matthias

ADD REPLYlink written 2.8 years ago by matthias.desmet150
0
gravatar for ed.dreuzy
2.8 years ago by
ed.dreuzy10
ed.dreuzy10 wrote:

Hi,

I have exactly the same problem, I get the following message when I try to save an edited workflow :

Duplicate workflow outputs with name [output_file] found.

Did you find out what is the matter here ?

Thanks,

Edouard d

ADD COMMENTlink written 2.8 years ago by ed.dreuzy10

No, I haven't sorted out the issue yet, I still need to reproduce it.  Can you share the offending workflow with me?

ADD REPLYlink written 2.8 years ago by Dannon Baker3.7k
0
gravatar for rosm
2.8 years ago by
rosm0
Switzerland
rosm0 wrote:

Thank you.

I was informed that the problem is that during the workflow two outputs (html type) with the same name are generated and this is not possible for galaxy.  I had used the workflow previously without any problem and I have not idea how this change occurred. 

Fortunately I could get again the original workflow and I deleted the damaged one.

 

 

ADD COMMENTlink written 2.8 years ago by rosm0
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