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Question: Job waiting to run
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gravatar for wei-ming_yu
3.2 years ago by
wei-ming_yu • 0
United States
wei-ming_yu • 0 wrote:

Hi,

 

I used Cufflink to run some jobs. It's been quiet some time but all my jobs are still waiting to run.

I wonder if my jobs are already in queue? Should I re-run the jobs?

 

Thanks!

 

Wei-Ming
rna-seq cufflinks galaxy • 840 views
ADD COMMENT • link •
modified 3.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.2 years ago by wei-ming_yu • 0
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gravatar for Jennifer Hillman Jackson
3.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If the jobs are grey, then they are queued. It is almost always best to leave these to execute, otherwise you will lose your place in the queue for no benefit (the job will just queue up again, but at the end). If the jobs are a light blue, then they are paused and this means that an upstream step was problematic. Fix that tool with a re-run and you will be presented with the option to "Resume dependencies" which means to re-queue downstream jobs with the new output as input.

More about dataset states is in the Galaxy Support wiki, Section 2.6 https://wiki.galaxyproject.org/Support#

Thanks, Jen, Galaxy team

 
ADD COMMENT • link written 3.2 years ago by Jennifer Hillman Jackson ♦ 25k
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