Job Waiting To Run

6.6 years ago by

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hi Ateequr, We can let you know that the public main Galaxy instance is very busy right now and this is the cause for the delay. A cloud instance many be a solution for your or others reading this post. Help to get started is in this wiki: http://wiki.g2.bx.psu.edu/Admin/Cloud Take care, Jen Galaxy team

ADD COMMENT • link written 6.6 years ago by Jennifer Hillman Jackson ♦ 25k

Hi Jen, I am experiencing the same issue (job pending since yesterday) as Ateequr, but not with other tools such as pileup. Are you sure this is due to heavy load, not because of problems with Bowtie tool? It might just take a while for me to figure out how to use your cloud instance. Thanks, Michael To: Ateeq ur Rehman Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Job waiting to RUN Hi Ateequr, We can let you know that the public main Galaxy instance is very busy right now and this is the cause for the delay. A cloud instance many be a solution for your or others reading this post. Help to get started is in this wiki: http://wiki.g2.bx.psu.edu/Admin/Cloud Take care, Jen Galaxy team ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ Email Disclaimer: www.stjude.org/emaildisclaimer

ADD REPLY • link written 6.6 years ago by Wang, Michael • 30

Hi Michael, Yes, we are certain that Galaxy is processing jobs and is experiencing a heavy user load. The variable job working time is due to the type of job and which of our clusters it runs on. We have substantial resources dedicated to the NGS mapping jobs, and job quotas help to ensure that these are distributed fairly to all users on the public instance, but there is still competition when we are busy. These are the types of jobs that will generally take the longest to queue and complete when we are busy. When using the Cloudman service, getting started initially will take some account set up, but the tutorial instructions on our wiki are very detailed and once you get started this is designed to be as simple as possible for scientific users to implement. If you do run into problems, please let us know and we can help, using the galaxy-dev@bx.psu.edu mailing list. http://wiki.g2.bx.psu.edu/Admin/Cloud http://wiki.g2.bx.psu.edu/Mailing%20Lists Thank you for understanding, Jen Galaxy team

ADD REPLY • link written 6.6 years ago by Jennifer Hillman Jackson ♦ 25k

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