Question: Job running with on queue datasets
gravatar for Thibaut Guirimand
2.1 years ago by
Thibaut Guirimand50 wrote:


I've seen that I can launch jobs with in still in queue datasets. So the job seems to start (yellow) without his data.

So my questions are :

  • Is really the job running and waiting the dataset to be launched?
    • If yes, is this job taking a place on the cluster and blocking the queue?
  • Is this meaning that my job and my datasets were on different queue?

It would be a little bit strange to block the queue because a job wait a dataset still in this queue.

queue jobs galaxy dataset • 761 views
ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Thibaut Guirimand50

What server are your using? or elsewhere?

Which exact tool (or tools) are launching and executing (yellow) when the inputs are still in queue (grey)? This would be a problem. Name and version from the user interface will help pinpoint the exact tool/version, or capture the tool shed link to the repo - either is fine.

Thanks for the additional info, Jen, Galaxy team

ADD REPLYlink written 2.0 years ago by Jennifer Hillman Jackson25k

It wasn't on but on

The launched tools is under development and not published yet and the input data were created with the "upload_local_file" tool (to simplify the problem, it seems to be a modified version...).

The server has been restarted and the problem doesn't persist. It makes the bug difficult to reproduce.

ADD REPLYlink modified 2.0 years ago • written 2.0 years ago by Thibaut Guirimand50
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