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Question: Nearest Neighbor analysis
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gravatar for lukacdm
3.2 years ago by
lukacdm • 0
United States
lukacdm • 0 wrote:

Does anyone know of a public galaxy instance that can run a nearest neighbor analysis to compare ChIP-Seq peak locations with user-inputted genomic features like TSSs and other DNA motifs?  Thanks in advance.
nearest neighbor • 782 views
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modified 3.1 years ago by Bjoern Gruening ♦ 5.1k • written 3.2 years ago by lukacdm • 0
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gravatar for Bjoern Gruening
3.1 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi,

I guess nearly ever instance can do this. Have a look at the closest tool from the BED tools suite: http://bedtools.readthedocs.org/en/latest/content/tools/closest.html

BEDtools are also included in the Tool Shed so you can install them if you like.

Cheers,

Bjoern
ADD COMMENT • link written 3.1 years ago by Bjoern Gruening ♦ 5.1k
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