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• MACS error while analyzing ChIP-seq peakes
  Hi, I am analyzing my ChIP-seq data. I am pretty sure I am following the workflow correctly, beca...
• MACS gives the same output using different inputs and with no input
  Hi, we use MACS to call peaks for all of our ChIP-seq data and it has never given us any problems...
• Job Status - Waiting to run since yesterday and not changing
  Hello, I am a new user. I have been trying to get a job that uses MACS tool (Model-based Analys...
• I have some problems to deal with macs.
  Hello, I recently followed the protocol of m6A sequencing which is published in 2013 (Dominissin...
• MACS fails, finds peaks but can't build model
  Hi,  I'm using the Galaxy GVL-QLD instance.    I have single reads chip-seq files from E. coli...
• MACS did not work - invalid literal for int() with base 10: '1:N:0:CAGATCTG'
  Hi I tried to call peaks of my ChIP-seq with MACS but an error appeared: INFO @ Thu, 21 Apr 201...
• ChIP-Sequencing data analysis
  Hello, I am trying to analyze ChIP-Seq data and extract enriched motifs from it. I have done the...
• Help! Galaxy MACS Peak Calling-
  Hi I have aligned my ChIP-Seq and Input to genome and created SAM files. I tried to do peak call...
• Chip-Seq Data
  Hi, I have illumina ChipSeq data in txt format with this structure: @HWI-EAS225:8:1:1:58#0/1 NAG...
• chip-seq analysis using galaxy
  For paired-end analysis, why do i see Chip-Seq Tag file 1 and 2. ? Both forward and Reverse reads...
• Read count across interval
  Hello, I'm trying to retrieve a score for ATAC-seq (similar processing to ChiP-seq data), at an i...
• ChIP seq : How to map sequencing data that one base is not called?
  I did ChIP-sequencing. During sequencing process, one base was not called due to a problem at the...
• Macs Problem
  Hi, I recently mapped some ChIP-seq data to the mm8 version of the mouse genome with Bowtie to c...
• A Question in ChIP-seq Normalization
  Excuse me? A few days ago I read a paper "Histone modification levels are predictive for gene exp...
• Error:Ordinary Output Of Macs In Stderr
  Hello, galaxy users and developers, I wrote a perl script conducting saturation analysis which ca...
• Can I make a 'gene model for splice junctions' for use in RNA STAR inside Galaxy?
  I am a complete newbie to RNA-seq analysis. I am trying to follow online tutorials etc to learn t...
• Chip Seq analysis with multiple biological replicates for differential expression
  Hello, I am very new to sequence data analysis and had some structural questions. I am trying to ...
• MACS galaxy error
  I am using MACS on Galaxy and I get this error. cant understand why. I already lowered MFOLD par...
• Error with MACS2 peak calling
  Hi dear all, i am new to ChIP-seq analysis and i have been recently using MACS2 callpeaks o...