Similar posts • Search »

• quantifying differential gene expression across three groups using cuffdiff
  Hello, I am trying to identify differentially expressed genes across three groups.  The groups c...
• Concatenating four Nextseq fastq files
  Hi, Please excuse my naivety but my sequencing was run on NextSeq with single end reads, I have...
• Concatenate datasets tail-to-head with and without the (cat)
  Hello, I have FASTq files created across four different flow cells from the same sample, so want ...
• GC and Rik genes
  Hello, I ran an RNA-Seq analysis using Cufflinks. After finishing the analysis I got a long list...
• Need help with "Concatenate datasets" tool
  Hello, What is the difference between "Concatenate datasets tail-to-head" under "Text Manipulati...
• Enrichment analysis and Fisher's exact test
  I have a gene list and a table file with GO terms.  How can I make the gene list be used in the e...
• Extract Spliced Transcripts From Cuffmerge
  Hi All, I have mapped RNA-Seq reads to an unannotated partial genome assembly and assembled them...
• Finding Medians with Decimals
  I am trying to find the medians of several array SNPs that all hover around 1. I have tried group...
• Running multiple workflows with multiple inputs
  Hi, I recently learnt to create workflows and to script in galaxy using bioblend. Seems like a v...
• Ensembl numbers to gene symbols
  Hello, I performed RNA Seq analysis using DeSeq2. At the end of the analysis it got differential...
• How To Do An Go Enrichment Analysis In Galaxy?
  Hi everyone, I got a list of differentially expressed genes from my RNA-seq data. Is there a t...
• Clustal alignments for ref_seq genes across specific mammals
  Hello I'm trying to do a gene-by-gene phylogenetic analysis between several mammalian species. T...
• deepTools computeMatrix sorted values WITH gene identifiers
  I've performed a computeMatrix analysis on a ChIP-seq sample referenced to gene TSSs. This genera...
• How Much Fpkm Can Be Take Into Consideration When Compare Gene Expression
  Dear All, I am comparing the gene expression between two cell types by examining the Cufflink ou...
• FASTAQ file failing to convert to Fastaqsanger on FASTAQ Groomer
  Hello, I have a fasta file for a gene sequence which I had obtained from Wormbase. Also I have a...
• Concatenate fastq files in galaxy
  Hi, I have several fastq files that I want to merge. can anybody share how to concatenate multipl...
• Concatenate vs Concatenate (cat) Utility in Galaxy
  I see there are two wrapped tools under the Text Manipulation header for concatenating datasets, ...
• trinity statistical analysis
  Hi I am new trinity user at usegalaxy. I used trinity to assemble my NGS data and received fasta ...
• Concatenate locally cached assembly
  I wish to create a custom build of the mm9 assembly by inserting a FASTA file. Is there a way I ...
• cuffdiff output to gene enrichment analysis
  Hi all, I successfully ran my RNA-seq data through the entire tuxedo suite on galaxy. I would li...
• Micro-RNA Host Genes
  Hi, I have carried out differential expression analysis using Deseq2. One of the most differentia...