Similar posts • Search »

• Tool error "Remote job server indicated a problem running or monitoring this job"
  Hello Galaxy team, I'm trying to align some fastq files to mm10 and the job crashes with this de...
• Bowtie2/BWA-MEM remain waiting to run for several days in Main server. Is it only in my account?
  Hi all, I've been trying to run Bowtie2 and BWA-MEM with several datasets and in different histo...
• Mapped paired-end reads with Bowtie2
  Hi Biostar community, I have paired-end reads for MeDIP-seq. I'm able to mapped read1 and read2 ...
• Problems running jobs
  I'm a new galaxy user, and I am having problems running any jobs.  Initially, we thought the prob...
• BWA doesn't work
  Hi, I'm trying to use BWA since yesterday but the jobs are still waiting to run. Could it be a s...
• Bowtie2 not working
  Dear sir, i have uploaded some RNA Seq data and done with FastQc. I wanted to map the reads to m...
• mapping tools error: "Remote job server indicated a problem running or monitoring this job"
  Hi, I'm trying to use bwa or bowtie to align paired collection of reads. However, I am continual...
• Local instance: This job is waiting to run
  Hi all I'm loading a fastq file (90Mb....so not a big one) on my local instance of galaxy, but i...
• Tool error: Remote job server indicated a problem running or monitoring this job.
  Hi, I'm trying to use Cufflinks and TopHat several times since last Friday, Feb. 24th. However, ...
• This job is waiting to run
  Hi, The job is waiting to run for 2 days. What should I do? I'm using STAR and I wonder if my jo...
• VCF-VCFintersect error - invalid literal for int() with base 10: 'false'
  Hi, I'm trying to run a VCF-VCFintersect job I've run before and the job is failing with this err...
• Bowtie2 error on locally installed Galaxy : unable to finish job
  Hi, I've installed a local Galaxy. I used data_manager_fetch_genome_all_fasta to get a galGal4 ge...
• Is Trinity currently working?
  I'm trying to run Trinity but keep receiving the following error message: "Remote job server indi...
• Tophat2 index problem
  I'm trying to align RNA-seq data of wheat genome so i used bowtie2 with large index option to bui...
• TopHat2 run with the error message "The Cluster DRM System has terminated this Job"
  Hello, I use Galaxy regularly, and used TopHat2 earlier without any problem. However, just a day ...
• Tophat can't see the build-in reference genome?
  I successfully fetch an hg19 and build an bowtie2 index with Data managers. Bowtie2 can see the r...
• Alignment with Bowtie2 - grayed
  Hello Galaxy team, I started running a Bowtie alignment 2 days ago, it became yellow but then gr...
• Trying to Assemble SRAs with Unicycler
  I'm trying to assemble SRA reads from NCBI and I'm getting the error "Remote job server ind...
• Bowtie2 jobs queued for over 24hours
  Hi, Are there currently any known issues with bowtie2? I've had a couple of jobs that were queue...
• This job is waiting to run for almost 12 hours
  Hi, I'm a newbie using Galaxy. I am trying to create assemblies with Unicycler, but the job is n...
• FASTQ Groomer is taking a long time to process one file
  Hi,  I'm using the Main Galaxy instance to process RNA-seq FASTQ files. I used the batch mode to...
• Nebula Problem
  Hello, I'm using Nebula and when I try to use the annotation tools (genomic annotation and gene ...
• MACS2 undefined Error
  Hello Galaxy team, I'm running some pretty standard peak calling using MACS2 and get the followi...