MACS2 undefined Error

Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Forum

Planet

All »

Home

Welcome to Galaxy Biostar! User support for Galaxy! about • faq • rss

Community

Log In

Sign Up

Add New Post

Question: MACS2 undefined Error

2.2 years ago by

VY • 120

London

VY • 120 wrote:

Hello Galaxy team,

I'm running some pretty standard peak calling using MACS2 and get the following error as the job fails :

This job failed for reasons that could not be determined. Please click the bug icon to report this problem if you need help.

Is there a tool issue? I've tried doing this in a number of datasets and it seems to do it for some and not for others... I'll submit a bug report and put the url of this thread in the report message.

chipseq chip macs2 • 664 views

ADD COMMENT • link •

modified 2.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.2 years ago by VY • 120

There is likely a problem with the inputs. Review of the bug report will occur today with feedback. Jen, Galaxy team

ADD REPLY • link written 2.2 years ago by Jennifer Hillman Jackson ♦ 25k

2.2 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I confirmed that this problem was related to recent server issues.

The Galaxy server at http://usegalaxy.org underwent some corrections yesterday. The root problem may have resulted in delayed access, failed job runs, and failed data loading (FTP and other).

Access is normal now and any failed jobs should be re-run. This may include reloading/recreating input datasets. If errors reoccur, please submit a new bug report.

Sorry for the inconvenience, Jen, Galaxy team

ADD COMMENT • link written 2.2 years ago by Jennifer Hillman Jackson ♦ 25k

Please log in to add an answer.

Similar posts • Search »