Question: how can i upload my data in GigaGalaxy for assembly
0
gravatar for DL
3.7 years ago by
DL0
DL0 wrote:

I need to use the tool "NGS:SOAPdenovo" in GigaGalaxy when I upload my data in GigaGalaxy then it take so much time still unfinished. So please tell me that how to upload my data in it.

upload gigagalaxy data galaxy • 854 views
ADD COMMENTlink modified 12 weeks ago by Jennifer Hillman Jackson25k • written 3.7 years ago by DL0
0
gravatar for Jennifer Hillman Jackson
3.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

You are working here?
http://galaxy.cbiit.cuhk.edu.hk/
http//wiki.galaxyproject.org/PublicGalaxyServers#GigaGalaxy

Browser upload of data over 2G will not work. And I do not believe that the GigaGalaxy public instance supports FTP file transfer. How much data quota each user is permitted is not noted in the site's documentation or under User -> Preferences. In theory you could load your data into a public FTP site, then load using a URL with the "Get Data -> Upload" tool, but I have not tried this myself.

So there are a few unknowns and the site is labeled as being under development. You have some choices:

  1. Try loading data by URL and find out of there is a data quota by testing.
  2. Contact the groups that support the site. I would try GigaScience directly then associated research groups. All are noted on the site's home page.
  3. Research the tools/workflows that you want to use at this site, then install these into a cloud instance of your own for actual use and work. GigaScience supports publication data/resources intended to be used this way.

Best, Jen, Galaxy team

ADD COMMENTlink modified 12 weeks ago • written 3.7 years ago by Jennifer Hillman Jackson25k
0
gravatar for alizgarcia.rg
12 weeks ago by
alizgarcia.rg0 wrote:

How can i to install Velvet program in Galaxy?

ADD COMMENTlink written 12 weeks ago by alizgarcia.rg0

Hello - Please ask this question in a new post and we can help. Once I see that I'll remove this post as it is unrelated to the original Q&A here. Thanks! Jen, Galaxy team

ADD REPLYlink modified 12 weeks ago • written 12 weeks ago by Jennifer Hillman Jackson25k
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