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Question: how can i upload my data in GigaGalaxy for assembly
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gravatar for DL
3.8 years ago by
DL • 0
DL • 0 wrote:

I need to use the tool "NGS:SOAPdenovo" in GigaGalaxy when I upload my data in GigaGalaxy then it take so much time still unfinished. So please tell me that how to upload my data in it.
upload gigagalaxy data galaxy • 890 views
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modified 4 months ago by Jennifer Hillman Jackson ♦ 25k • written 3.8 years ago by DL • 0
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gravatar for Jennifer Hillman Jackson
3.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

You are working here?
http://galaxy.cbiit.cuhk.edu.hk/
http//wiki.galaxyproject.org/PublicGalaxyServers#GigaGalaxy

Browser upload of data over 2G will not work. And I do not believe that the GigaGalaxy public instance supports FTP file transfer. How much data quota each user is permitted is not noted in the site's documentation or under User -> Preferences. In theory you could load your data into a public FTP site, then load using a URL with the "Get Data -> Upload" tool, but I have not tried this myself.

So there are a few unknowns and the site is labeled as being under development. You have some choices:

  1. Try loading data by URL and find out of there is a data quota by testing.
  2. Contact the groups that support the site. I would try GigaScience directly then associated research groups. All are noted on the site's home page.
  3. Research the tools/workflows that you want to use at this site, then install these into a cloud instance of your own for actual use and work. GigaScience supports publication data/resources intended to be used this way.

Best, Jen, Galaxy team
ADD COMMENT • link modified 4 months ago • written 3.8 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for alizgarcia.rg
4 months ago by
alizgarcia.rg • 0
alizgarcia.rg • 0 wrote:

How can i to install Velvet program in Galaxy?
ADD COMMENT • link written 4 months ago by alizgarcia.rg • 0

Hello - Please ask this question in a new post and we can help. Once I see that I'll remove this post as it is unrelated to the original Q&A here. Thanks! Jen, Galaxy team

ADD REPLY • link modified 4 months ago • written 4 months ago by Jennifer Hillman Jackson ♦ 25k
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