Question: Load large file on local instance of galaxy
0
gravatar for salvatore_camiolo
3.2 years ago by
Italy
salvatore_camiolo • 0 wrote:

Hi Guys,

I have downloaded and set up a local instance of galaxy. It runs great. However when I try to load files larger than 2giga the software tells me to use the ftp which I did not get exactly how to do (I do not have any upload via FTP in the page that opens upon clicking on the tool "Upload data". I read one can upload large files using a new data library. If I do so I have no upload file as described in the galaxy video turorial. Can you help me on this please

Thanks

 

galaxy • 1.1k views
ADD COMMENT • link • modified 3.2 years ago by Martin Čech ♦♦ 4.9k • written 3.2 years ago by salvatore_camiolo • 0

Do you have your own instance? Have you seen this page? https://wiki.galaxyproject.org/FTPUpload

ADD REPLY • link written 3.2 years ago by Bjoern Gruening ♦ 5.1k

Yes, but I can not see the section relative to ftp transfer in my "Get  data -> Uppload file " page......

ADD REPLY • link written 3.2 years ago by salvatore_camiolo • 0

You probably have not activated the FTP functionality in galaxy.ini. Galaxy needs to talk to an FTP Server.
 

ADD REPLY • link written 3.2 years ago by Bjoern Gruening ♦ 5.1k

Thanks! that could be a reason. I just saw the guide at https://wiki.galaxyproject.org/Admin/Config/UploadviaFTP that looks very laborious actually. I would have expected loading large files would be easier in a so easy to use platform as galaxy. I am sure that there is a reason for that. I'll try to give it a try in a couple of days. Thanks for the help!

ADD REPLY • link written 3.2 years ago by salvatore_camiolo • 0
2
gravatar for Martin Čech
3.2 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

If you are an admin on your instance of Galaxy you can import large files from the filesystem without copying to Galaxy Data Library.

More info here: https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles

You can also use the Data Libraries Beta interface for that once the admin upload is configured (using the link above)

ADD COMMENT • link written 3.2 years ago by Martin Čech ♦♦ 4.9k
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