Question: Galaxy--Upload Data File
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gravatar for Nan Deng
7.9 years ago by
Nan Deng • 10
Nan Deng • 10 wrote:
Hi, I installed Galaxy locally, and just start to use it, and I want to use it to align my short reads with fastq format using Tophat. The first thing I need to do is uploading my data file. If the data is small then that's no problem, but my data is about 5G, so when I upload, it took very long time (it is still uploading). Is it normal? and could you let me know how long it will take? I think since both Galaxy and my data are on my local machine, it should be very easy to let Galaxy know where the data is rather than uploading for such a long time. Thanks Nan
galaxy • 1.4k views
ADD COMMENT • link • modified 7.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.9 years ago by Nan Deng • 10
0
gravatar for Jennifer Hillman Jackson
7.9 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Takako, The best way to load data locally is to use the the method described here: https://bitbucket.org/galaxy/galaxy- central/wiki/DataLibraries/UploadingFiles Please let us know if we can help more, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org
ADD COMMENT • link written 7.9 years ago by Jennifer Hillman Jackson ♦ 25k
Would it be possible to configure Galaxy to simply refuse to upload files greater than 2 GB since almost no browsers seem to support it? A large number of people seem to run into this issue. -Farhat
ADD REPLY • link written 7.9 years ago by Farhat Habib • 80
Hi Farhat, This is reasonable suggestion, I'll pass this along to the development team for consideration. Thanks for using Galaxy! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD REPLY • link written 7.9 years ago by Jennifer Hillman Jackson ♦ 25k
Hi Jen, If you do that, please make it an option in universe_wsgi.ini. It's fine if uploads of > 2GB will be disabled by default, but please allow me to enable it if it's working for me... Cheers, Pi mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online
ADD REPLY • link written 7.9 years ago by Pieter Neerincx • 360
Hi Pi, Your ideas are great, too. The dev team appreciates all input and this will be passed along, too. Thanks for the feedback! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD REPLY • link written 7.9 years ago by Jennifer Hillman Jackson ♦ 25k
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