I'm trying to look at RNApolII ChIPseq data from a mouse using the rat genome as the reference. I want to know what genetic structures the peaks are closest to (e.g. regulatory regions, exons, introns, etc.). Is this the right tool to use? What is a VCF dataset? And where would I acquire one for a rat?
Tool name: VCF-BEDintersect:
Tool version: 0.0.2
Tool ID: toolshed.g2.bx.psu.edu/repos/anton/vcfbedintersect/vcfbedintersect/0.0.2
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/anton/vcfbedintersect