Question: Need help with "VCF-BEDintersect:" tool
0
gravatar for blc2688
3.7 years ago by
blc26880
United States
blc26880 wrote:

I'm trying to look at RNApolII ChIPseq data from a mouse using the rat genome as the reference.  I want to know what genetic structures the peaks are closest to (e.g. regulatory regions, exons, introns, etc.). Is this the right tool to use?  What is a VCF dataset?  And where would I acquire one for a rat? 


 

Tool name: VCF-BEDintersect:
Tool version: 0.0.2
Tool ID: toolshed.g2.bx.psu.edu/repos/anton/vcfbedintersect/vcfbedintersect/0.0.2
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/anton/vcfbedintersect

 

vcf-bedintersect: • 811 views
ADD COMMENTlink modified 3.7 years ago by rjcmrodrigues0 • written 3.7 years ago by blc26880
0
gravatar for rjcmrodrigues
3.7 years ago by
Germany
rjcmrodrigues0 wrote:

VCF is a Variant Calling File (http://vcftools.sourceforge.net/) it's basically for SNP analysis. I really don't think that's what you are looking for.

ADD COMMENTlink written 3.7 years ago by rjcmrodrigues0
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