I've been mapping this sample many times without any problem.
Now I'm trying to do the exact same thing and it doesn't work. It seems like it doesn't find the metadata.
I mapped 2 other samples at the same time as this one, the other 2 worked fine but not this one. Any idea why is that so ?
Tool name: Map with BWA for Illumina
Tool version: 1.2.3
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/bwa_wrappers
If you get a red history output on main or test, you can submit an automated bug report which allows devteam members to check your history and help to find the source of the error and debug - assuming you don't mind us seeing your data.
Otherwise I doubt anyone can offer much of an answer without a lot more detail - like which Galaxy instance?