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• Alignment of entire bacterial genomes
  How entire genomic alignment of bacterial species can be carried out????? I have added ten genom...
• bacterial whole genome analysis
  good day, how do i upload my fastq files to galaxy server to perform bacterial whole genome anal...
• How to add a bacterial genome to Galaxy database?
  I have my ChIP-Seq data on Galaxy but can't map it because the bacterial genome that I am working...
• Bacterial Sequence for Variant Analysis
  I am analyzing paired-end data for bacterial genome and have done the following steps: *FAST...
• Finding Open Reading Frames And Corresponding Genes
  Hi I am sequencing a bacterial genome and have assembled my Illumina reads (40 bp single) using b...
• How to use ANNOVAR with bacterial genome?
  I am trying to automatically generate annotations for a VCF file generated from the Mtb H37Rv gen...
• Cufflinks Related Problem
  Dear Noa, Can you please tell me the parameters that I should keep while mapping bacterial tran...
• Unicycler bacterial genome assembly result visualization
  I have used Unicycler to assembly bacteriala genome, but I am unable to view the unicycler final ...
• Bacterial genome annotation using annovar
  Hello, am writing my own pipeline in python in order to annotate bacterial genome MTB, am new in ...
• Create and extract consensus sequence after initial genome mapping using a custom genome
  I have aligned fastq sequences (from an insect vector) to a small bacterial genome of 1.2 mb (as...
• Can't Rsync bacterial genomes
  Hi everyone, I have a local instance of Galaxy. I am trying to grab some of the reference genome...
• Sliding Window To Get Average Of A Seq Reads
  I have a bacterial genome which I divided into bins of 5 bp and counted reads in each bin. Now I ...
• Loading VCF into a local IGV fails with metadata error during data prep step
  Although my genome sequence is part of the list of options thanks to custom build, the link to di...
• Need help with "Map with Bowtie for Illumina" tool
  Hi, I mapped my illumina sequences with one reference bacterial genome and got bam file. Does any...
• Convert genome coordinates between assemblies and genomes (Galaxy Version 1.0.5) aka LiftOver
  I have two related bacterial genomes of same species - different subspecies. I want to map the co...
• Unicycler assembly on galaxy
  Hi I have a bacterial genome (illumina) which I have to assemble. On trimming the data with Trim...
• Create Gtf Or Gff3 File From Draft Genome
  Hello Galaxy community, I recently entered in RNA-Seq world, I’m a second year PhD. We have rece...
• Bacterial RNAseq in Galaxy
  Is there a workflow to follow alignment of bacterial RNAseq. I want to align FAStq file and then ...
• De-novo assembly of a bacterial genome
  I am trying to assemble a bacterial genome of length 8Mb in **orione.crs4.it** . I could successf...
• Galaxy interval format - what should be provided as CHROM#?
  Dear colleagues, I have a .txt file with >100 lines of the following format (1st column - seq...
• Bacterial Metatranscriptomes
  Hi everybody, I am trying to perform metatranscriptomic analysis on gut samples. Whereas the host...
• Joining Two Fastq Files With Overlap Reads
  I have a data generated from Miseq 2X250 bp these reads are overlap, before aligning to a my cust...