Question: Sliding Window To Get Average Of A Seq Reads
gravatar for shamsher jagat
6.0 years ago by
United States
shamsher jagat590 wrote:
I have a bacterial genome which I divided into bins of 5 bp and counted reads in each bin. Now I want to use a sliding window of say 100 bp and count the average. Is there any option in Galaxy that I can do it I have bed file of data. Thanks Kanwar
galaxy • 971 views
ADD COMMENTlink modified 6.0 years ago by Jennifer Hillman Jackson25k • written 6.0 years ago by shamsher jagat590
gravatar for Jennifer Hillman Jackson
6.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Kanwar, This appears to be related to your latter question, but if not, please let us know. The "Make window" tool is a good choice for breaking up intervals and a tools such as "Line/Word/Character count" and "Compute" in the Text Manipulation group can compute some simple statistics on datasets and lines of data. The tool "Join, Subtract and Group -> Group" may also be helpful. Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.0 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 183 users visited in the last hour