Question: Extreme Newbie Question
gravatar for Seth Stern
5.4 years ago by
Seth Stern40
Seth Stern40 wrote:
Hi Everyone, I recently uploaded about 1.8 GB of MiSeq reads (using ftp). The upload seemed to go fine, but Galaxy seems to be very unhappy with the file. I'm seeing the following message in History: 1: empty format: txt, database: <https:"" datasets="" bbd44e69cb8906b504f52516868a1f84="" edit=""> ? ZIP file contained more than one file, only the first file was added to Galaxy. Can anyone tell me how to diagnose the problem ? Many thanks, Seth Seth Stern, Ph.D. 650 996 8726 (cell)
galaxy • 854 views
ADD COMMENTlink modified 5.4 years ago by Jennifer Hillman Jackson25k • written 5.4 years ago by Seth Stern40
gravatar for Jennifer Hillman Jackson
5.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Seth, Multi-file .zip archives are not accepted as viable input - and if loaded, the results can be unpredictable. The best option is to unzip the archive locally on your computer, compress each individual file as a .gz file (if you want to - not necessary), and then FTP those files. Make sure you do not use "tar" as a compression tool. For the supported compression types, please see the FTP Upload wiki here, 2nd paragraph at top: Thanks! Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training
ADD COMMENTlink written 5.4 years ago by Jennifer Hillman Jackson25k
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