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Question: Galaxy does not seem to recognize zipped files
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gravatar for raizen
3.9 years ago by
raizen • 0
United States
raizen • 0 wrote:

I uploaded fastq.gz files, each around 3 Gigabytes. I used ftp to upload. However, when I try to add to my project, the file turns Red and not green. When I load as uncompressed fastq file, it works fine and turns green. However, FTPing non-compressed files takes forever. any advice?

thanks, David
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modified 3.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.9 years ago by raizen • 0
0
gravatar for Jennifer Hillman Jackson
3.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Where are you working? On the public Main instance (http://usegalaxy.org) or in a local/cloud? 

If on Main, double check that the FTP load was complete and that you can uncompress the files locally (that wasn't clear in your question).

If a local/cloud, we'll need more information about the error to help.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.9 years ago by Jennifer Hillman Jackson ♦ 25k

<html> <head> <meta content="text/html; charset=utf-8" http-equiv="Content-Type"> </head> <body bgcolor="#FFFFFF" text="#000000"> I was on (http://usegalaxy.org). The ftp load seemed complete (correct size file uploaded and my Command terminal gave me a message that the transfer was complete). I think it may have something to do with the compression program I used locally (WinZip). I now downloaded the .gz files directly from the server of our NGS site to the galaxy website by copying and pasting  (i.e. without the intermediate step on my local computer), it worked fine.

thanks, david


On 1/12/2015 12:04 PM, Jennifer Hillman Jackson on Galaxy Biostar wrote:
Activity on a post you are following on Galaxy Biostar

User Jennifer Hillman Jackson wrote A: Galaxy does not seem to recognize zipped files:

Hello,

Where are you working? On the public Main instance (http://usegalaxy.org) or in a local/cloud? 

If on Main, double check that the FTP load was complete and that you can uncompress the files locally (that wasn't clear in your question).

If a local/cloud, we'll need more information about the error to help.

Thanks, Jen, Galaxy team

You may reply via email or visit A: Galaxy does not seem to recognize zipped files


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ADD REPLY • link written 3.9 years ago by raizen • 0
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