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Question: Problem Uploading Txt Data
0
gravatar for Chunyu Liu
5.6 years ago by
Chunyu Liu • 30
Chunyu Liu • 30 wrote:
hi, I had an odd problem today, seems not a problem before: I am trying to upload a simple tab-delimited text file into galaxy, but it kept telling me: empty format: txt, database: hg19 The uploaded binary file contains inappropriate content Also, showed filesize as 0 bytes. I tried Unix format, DOS format. It is a very small data, only 348 bytes. 4 rows, as attached. What is WRONG? Thanks! Chunyu
galaxy • 1.2k views
ADD COMMENT • link •
modified 5.5 years ago by Daniel Blankenberg ♦♦ 1.7k • written 5.6 years ago by Chunyu Liu • 30
0
gravatar for James Taylor
5.6 years ago by
James Taylor ♦ 470
United States
James Taylor ♦ 470 wrote:
Are the first four lines of your file deliberately whitespace? This will definitely cause problems for file type detection (it is not a valid TSV file as is). -- James Taylor, Assistant Professor, Biology/CS, Emory University
ADD COMMENT • link written 5.6 years ago by James Taylor ♦ 470
Actually, the file is all tab-delimited, from beginning to end. It has no problem uploading larger data. Seems to be bug somewhere? Chunyu -- Chunyu Liu, Ph.D. Associate Professor Department of Psychiatry University of Illinois at Chicago
ADD REPLY • link written 5.6 years ago by Chunyu Liu • 30
Hi Chunyu, can you provide us with a small, reproducible example? Thanks, Bjรถrn
ADD REPLY • link written 5.5 years ago by Björn Grüning • 350
0
gravatar for Daniel Blankenberg
5.5 years ago by
Daniel Blankenberg ♦♦ 1.7k
United States
Daniel Blankenberg ♦♦ 1.7k wrote:
Hi Chunyu, Thanks for reporting this issue, it has been resolved in our stable branch and will be available on our public server after the next update. Thanks for using Galaxy, Dan
ADD COMMENT • link written 5.5 years ago by Daniel Blankenberg ♦♦ 1.7k
Thanks! for fixing the problem before I get time to provide more test data. Chunyu -- Chunyu Liu, Ph.D. Associate Professor Department of Psychiatry University of Illinois at Chicago
ADD REPLY • link written 5.5 years ago by Chunyu Liu • 30
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