Question: .Bam File Upload And Use Problem
0
Lu, Yuan (MU-Student) • 20 wrote:
Recently I was trying to use Galaxy for my data analysis but ran into
problems.....
Condition:
I used galaxy server at PSU.
I tried load local .bam file directly to galaxy, I also tried FTP, but
both ways resulted into the same outcome.
The .bam files I was using are pure .bam files with no index.
Problems:
1.After I load them, the file was recognized as .txt file, and it is
"empty" (But it did take long time to upload to FTP ~1GB), in the
annotation window, it shows "The uploaded binary file contains
inappropriate content"
2. I tried to convert the file to .bam format, it returns "An error
occurred setting the metadata for this dataset. You may be able to set
it manually or retry auto-detection."
Anyone know how to solve this problem?
Y.L.
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modified 5.0 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
5.0 years ago by
Lu, Yuan (MU-Student) • 20
