Question: Missing genome for SAM-to-BAM conversion
gravatar for nicholas.anthony
2.2 years ago by
nicholas.anthony0 wrote:


I have a SAM file of aligned RNA-Seq reads that I need to convert to a BAM. Problem is, when I try to use SAM-to-BAM conversion, there aren't any genomes listed in the dropdown, and I'm having trouble finding the mouse mm9 genome in a format that Galaxy understands. I feel like the mouse mm9 genome should already be available on Galaxy. Is there a way to find and upload it so that I can shrink this unwieldy file?



ADD COMMENTlink modified 2.2 years ago by Jennifer Hillman Jackson25k • written 2.2 years ago by nicholas.anthony0
gravatar for Jennifer Hillman Jackson
2.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Assuming that you are working at, assign the "database" for the dataset to be "mm9" and the same genome will appear in the drop-down menu on the form.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 2.2 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour