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• Dot plot between two sequences
  Hi All, Is there any tool to plot dot plot between two sequences such that each sequence will li...
• how to identify the adapter sequence?
  After getting the FastQc reports, which report can I use to know the adapter sequence used in the...
• multiple seq alignment
  how to do multiple sequence alignments for 10 different sequences in fasta format ?
• Another way to collapse sequences
  Hi, Just trying to collapse my sequences down, however I noticed the Collapse Sequence feature o...
• How to use Mothur Unique.seqs
  I see two window 1. Sequences to filter I use this to select sequence(s) of new assembling 2. ...
• Re: Simulating Sequencing And Removing Redundant Sequences
  For 1) you may refer to Simulated Dataset of Solexa - SEQanswers Has anyone replied you for 2)...
• Making concensus sequence
  Hi,  How can I make consensus sequence from Ion PGM reads as BAM format G.Toksoy
• CRISPR Screens sequence analysis
  I wonder if Galaxy has support for CRISPR screens e.g. sgRNA sequence analysis pipeline Thanks, F...
• Extract Genome Sequence
  Hi everyone, I have the genome sequence and gene annotation file. Is there a tool on Galaxy to...
• clear overrepresented reads that arent adaptadors
  I am working in galaxy and I mapped the sequences with a genome of reference but the result show ...
• cDNA sequencing data analysis
  I am new to galaxy and sequencing data analysis. I have RAW files from cDNA sequencing and I am l...
• Question about Alignment of barcode sequence
  For Ion torrent data (each read is like barcode sequence followed by target sequence) I tried to...
• How to get sequence for a single gene from an RNA Seq file?
  Is there a way to extract the sequence data for a single gene from a RNA Seq1 data file?
• Helicos sequencing data
  I've downloaded a set of SRA files containing Helicos sequencing data.  Are there any tools on Ga...
• model based analysis of chip sequencing
  what is the meaning of forward tags and reverse tags in peak model of Model based analysis of chi...
• RepeatExplorer2 clustering: The number of sequences analyzed is very low
  Hello! In RepeatExplorer2 clustering, I need to work with 90,000,000 sequences. Is there the poss...
• Help removing part of a sequence
  Hi, I am trying to trim out part of a sequence so I can align it better to a reference sequence....
• Galaxy with Biomart export on Human GR37 build
  Hello, I am interested to export some sequences (rRNA, mitochondrial RNA etc) with Biomart on hu...
• FASTQC Overrepresented Sequences
  Hey all, after running Trimmomatic and clipping Illumina adapters, I always run a FASTQC to have...
• mpileup error: reference sequence is not being fetched correctly?
  Hi, I ran mpileup using Arabidopsis reference sequence but got an error message in the log file w...
• OTU Picking, removing duplictates
  Dear Sir/Madam I would like to know if there is any possibility to condensate sequences and  rem...
• ChIP seq : How to map sequencing data that one base is not called?
  I did ChIP-sequencing. During sequencing process, one base was not called due to a problem at the...
• Ws180 Genomic Sequence Not Available
  Hi, I am trying to fetch sequences from WS180 ce5. However, it seems that the sequences are not ...