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Question: Another way to collapse sequences
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gravatar for Briony
7 months ago by
Briony • 10
Briony • 10 wrote:

Hi,

Just trying to collapse my sequences down, however I noticed the Collapse Sequence feature only collapses sequences that have 100% homology. Is there a way to change this or is there another feature I could use to collapse sequences based on say 98% homology?

Thank you for your help.
collapse reads galaxy • 226 views
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modified 7 months ago by Jennifer Hillman Jackson ♦ 25k • written 7 months ago by Briony • 10
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gravatar for Jennifer Hillman Jackson
7 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This tool only finds exact matches. Grouping complete sequences based on homology is a much more complicated task and would include either assembly or mapping to a reference database.

Galaxy tutorials: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 7 months ago by Jennifer Hillman Jackson ♦ 25k
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