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• joining two fastq files
  Hello,  I received two fastq files for a single ChIP-seq sample and uploaded them to galaxy How...
• RNA seq analysis for samples from TCGA.
  I got files RNA seq files from TCGA. They are in TAR archive and will extract them. How do I uplo...
• "Deleted dataset" - from a dataset that isn't deleted.
  I am very very new to Galaxy and bioinformatics and have been trying to navigate my way through t...
• The uploaded data can not be found but the space was still occupied
  I uploaded my data few days before but restart my computor this morning. When I login to Galaxy, ...
• how to perform alignment using Hisat2
  Actually I have several questions to ask but I try to be very much to the point. I want to uploa...
• Data does not show up on Galaxy
  I uploaded 3 files to http://galaxy.genenetwork.org.  These files are showing up in my history.  ...
• File import after FTP upload doesn't work
  I uploaded fastq.gz files to the galaxy ftp server, and use the "upload file" function to try to ...
• Fasta file download
  Hello, I uploaded FASTQ files so that I may convert them to fasta files, and now i cant download ...
• Analysis of forward and reverse reads
  Hello. Newbie here: I have recently done some chip-seq, and for each sample, I have different ...
• Disk quota stays at 33% even after deleting all history items
  Hi, My "usegalaxy.org" account page shows that I am using 33% of disk space. In fact I have dele...
• Fw: Problem In Data Uploading
  Hi, I am a first time user in galaxy for analysis of my RNA-Seq data. I am facing probl...
• Data files not uploading
  I have 9 files that are waiting to upload. Three of them have uploaded but I have been waiting ho...
• Workflow won't run and can't be viewed
  I am having an issue with two workflows, one that I generated today from a new history and one th...
• how to add external files into history
  Is there a way to upload external files into history? Is it possible to upload files through htt...
• Getting FTP uploaded files into the history of a local Galaxy
  Hi, according to the upload tutorial, files uploaded by FTP can be transferred into the history b...
• Variant Annotation In Galaxy
  Hallo Galaxy users, I would like to annotate variants (in vcf file) found in my bacterial genome...
• upload files to Galaxy
  I want to upload some files to the Galaxy to run, but all my files are larger than 2GB, it told m...
• Fastq.gz files taking a long time to upload
  Hello, I am trying to upload two files, both of which are about 2.4 GB and in fastq.gz format. I...
• plotProfile/plotHeatmap - How to change the file names?
  I would like to compare H3K4me3 ChIP peaks of several samples at TSS. Therefore, I used "compute...
• Running multiple workflows with multiple inputs
  Hi, I recently learnt to create workflows and to script in galaxy using bioblend. Seems like a v...