Question: will you please add some plant genomes
gravatar for dksamuel
16 days ago by
dksamuel0 wrote:

will you please add some plant genomes, like Arabidopsis, Tomato, Potato, Rice, Citrus, thanks (I cant add a custom, I am not such an expert)

addition genome galaxy plant • 37 views
ADD COMMENTlink modified 15 days ago by Jennifer Hillman Jackson25k • written 16 days ago by dksamuel0
gravatar for Jennifer Hillman Jackson
15 days ago by
United States
Jennifer Hillman Jackson25k wrote:


There are plans to include a suite of curated plant genomes. I'm not sure of the timing yet as it depends on a few other changes involving the inclusion of more genomes (in general) and standardizing those across usegalaxy.* servers.

A custom genome is just a fasta file. Sometimes the format needs to be manipulated but there is a Galaxy tool that can do that for most cases (NormalizeFasta). Double check that the remaining identifiers are all unique and are an exact match for the identifiers in any reference annotation you plan to use. Please see:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 15 days ago by Jennifer Hillman Jackson25k
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