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• visualize tophat output on custom (zerbafish) genome, output not in list
  I am a beginner so this may be a basic question....I have taken 2 rnaseq datasets from the geo da...
• Please add the rice genome to tophat
  Please add the rice genome to tophat Please add the rice genome to tophat Please add the rice g...
• TopHat Reference Genomes: Where has the zebrafish reference genome gone?
  Hello Galaxy Team, I'm still a little new at using Galaxy, so please bear with me if this is a s...
• tophat reference genome
  Kindly add the genome of Pinus taeda and Picea glauca to the tophat reference genome as I am unab...
• Adding Danrer7 As A Reference Genome For Tophat2
  Can you add danrer7 as a reference genome for tophat2 for online Galaxy? Its there for tophat fo...
• Zebrafish Genome on HISAT2
  Hello, The reference genome for zebrafish (D. Rerio) is missing from Hisat2. Could this be added...
• No Zebrafish Danio Rerio Reference genome in Tophat2 drop down
  No Zebrafish Danio Rerio Reference genome in Tophat2 drop down Please advise. Many thanks
• Cufflinks output file with many 0 FPKM values
  Hi, I have run Cufflinks on my zebrafish RNAseq reads mapped using Tophat2. The Cufflinks output...
• Missing genome in Tophat2
  Hi Galaxy Team, Is there any way to get the latest Zebrafish (Danio rerio) genome added to the r...
• zebrafish genome for HISAT
  Hi, Any way to get the zebrafish genome added to the HISAT package? either zv9 or zv10? Thanks! Rich
• unable to load zebrafish GTF/GFF3 files from current history into any of the RNA analysis tools
  I am analyzing zebrafish RNA seq data, I am able to upload the fastq files, use trimmomatic, alig...
• Tophat Problem On A New Local Instance
  I have installed a local instance of Galaxy as a one user in a Mac Pro desktop. I got some valua...
• Adding Reference genome of Chicken and Duck in Tophat
  Dear sir, Kindly add reference Genome of Chicken (Gallus gallus) and Duck (Anas platyrhynchos) in...
• Custom genome for galaxy- Ensembl reference genome
  I want to perform a DEXseq analysis on alternative splicing, and it requires to map the RNA-seq d...
• Tophat Problem On A New Local Instance
  Hello, I will try this again without attachments and hope it gets on the list. I have installed ...
• Uploading Genome From Ensembl
  How do I upload the Zebrafish genome from Ensembl to my user history in Galaxy? I'm trying to map...
• Add a new reference genome
  Dear sir,    Sorry to bother you. I am not sure it is right to contact with you, but i need some...
• will you please add some plant genomes
  will you please add some plant genomes, like Arabidopsis, Tomato, Potato, Rice, Citrus, thanks (I...
• Gene annotation dataset from Ensembl not recognized by Cufflinks
  Hello Galaxy/Biostars, I am trying to perform RNA-seq analysis using Cufflinks at Galaxy. In ord...