New Genome Load Request

Question: New Genome Load Request

7.1 years ago by

Hello Galaxy, Would you please perform the following new genome load? Theobroma cacao All the necessary resource files can be found and downloaded at: http://cocoagendb.cirad.fr/gbrowse/download.html Thank you Mark Guiltinan Mark Guiltinan Professor of Plant Molecular Biology Penn State University Department of Horticulture 422 Life Sciences Building University Park, PA 16802-5807 Phone 814 863-7957 mjg9@psu.edu Web Site: http://guiltinanlab.cas.psu.edu

galaxy • 794 views

ADD COMMENT • link •

modified 6.8 years ago by Guru Ananda • 60 • written 7.1 years ago by Mark Guiltinan • 20

7.1 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hi Mark, We'll try to get this in ASAP - thank you for sending the source information. When on the Main server, I will send you an update email. Take care, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support

ADD COMMENT • link written 7.1 years ago by Jennifer Hillman Jackson ♦ 25k

6.8 years ago by

Guru Ananda • 60

Guru Ananda • 60 wrote:

Dear Mark, Sorry for the delay in response. We're wondering whether or not to include pseudomolecules (along with contigs and scaffolds) as genomic sequence for cacao genome. Can you kindly clarify this? Thanks, Guru. -- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team Penn State University 505 Wartik lab University Park PA 16802 guru@psu.edu

ADD COMMENT • link written 6.8 years ago by Guru Ananda • 60

Guru Yes please include, in fact they may be all that is needed? They represent the assembled contigs and scaffolds that were linked to the genetic map and this represent the chromosomes... I believe that they contain most of the contigs and scaffolds so there is redundancy. there is one Tc0 that represents the unassembled contigs and scaffolds left over after assembling the 10 pseudochromosomes that represent each of the 10 cacao chromosomes. Yopu could see how this is on the gbrowse at the below website. Regards Mark

ADD REPLY • link written 6.8 years ago by Mark Guiltinan • 20

Please log in to add an answer.

Similar posts • Search »