Question: New Genome Load Request
gravatar for Mark Guiltinan
7.1 years ago by
Mark Guiltinan20 wrote:
Hello Galaxy, Would you please perform the following new genome load? Theobroma cacao All the necessary resource files can be found and downloaded at: Thank you Mark Guiltinan Mark Guiltinan Professor of Plant Molecular Biology Penn State University Department of Horticulture 422 Life Sciences Building University Park, PA 16802-5807 Phone 814 863-7957 Web Site:
galaxy • 794 views
ADD COMMENTlink modified 6.8 years ago by Guru Ananda60 • written 7.1 years ago by Mark Guiltinan20
gravatar for Jennifer Hillman Jackson
7.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Mark, We'll try to get this in ASAP - thank you for sending the source information. When on the Main server, I will send you an update email. Take care, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 7.1 years ago by Jennifer Hillman Jackson25k
gravatar for Guru Ananda
6.8 years ago by
Guru Ananda60
Guru Ananda60 wrote:
Dear Mark, Sorry for the delay in response. We're wondering whether or not to include pseudomolecules (along with contigs and scaffolds) as genomic sequence for cacao genome. Can you kindly clarify this? Thanks, Guru. -- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team Penn State University 505 Wartik lab University Park PA 16802
ADD COMMENTlink written 6.8 years ago by Guru Ananda60
Guru Yes please include, in fact they may be all that is needed? They represent the assembled contigs and scaffolds that were linked to the genetic map and this represent the chromosomes... I believe that they contain most of the contigs and scaffolds so there is redundancy. there is one Tc0 that represents the unassembled contigs and scaffolds left over after assembling the 10 pseudochromosomes that represent each of the 10 cacao chromosomes. Yopu could see how this is on the gbrowse at the below website. Regards Mark
ADD REPLYlink written 6.8 years ago by Mark Guiltinan20
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