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Question: Adding plant genome browser to the galaxy
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gravatar for d.angra
3.5 years ago by
d.angra • 50
United Kingdom
d.angra • 50 wrote:

Hi

I am wishing to add the plant genome browser to galaxy. I iniially thought about UCSC as it has many features whiah are very useful for my project. I didnt realise that it needs a developer to accomplish this task I am not one.

Could anybody please help me what steps should I be taking in this direction?

Hoping so.

Thanks 

Viva

 

 
plant genome browser galaxy • 867 views
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modified 3.5 years ago • written 3.5 years ago by d.angra • 50
0
gravatar for Jennifer Hillman Jackson
3.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello Viva,

In Galaxy, this is quite simple. Use the Custom reference genome function including full indexing by creating a Custom Build. The visualization tool Trackster can then be used. This works for genomes, transcriptomes, exomes, etc. Full or partial. 

Best, Jen, Galaxy team
ADD COMMENT • link written 3.5 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for d.angra
3.5 years ago by
d.angra • 50
United Kingdom
d.angra • 50 wrote:

Hello Jen,

Thankyou very much. I am trying to do it.

Viva
ADD COMMENT • link written 3.5 years ago by d.angra • 50
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