Question: RNA Seq Tribolium castaneum Reference Genome Version
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gravatar for yugendrabalan
29 days ago by
yugendrabalan0 wrote:

TopHat2 lists Tribolium castaneum reference genome. How can I check if the listed version is the latest version?

ADD COMMENTlink modified 27 days ago by Jennifer Hillman Jackson25k • written 29 days ago by yugendrabalan0
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gravatar for Jennifer Hillman Jackson
27 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The name/version of the genome given by the source is included in the full name at all usegalaxy.* public servers. Only https://usegalaxy.org.au has Tophat2 indexes for: Tribolium castaneum: triCas2. The source is UCSC (based on the Baylor assembly): http://hgdownload.cse.ucsc.edu/goldenPath/triCas2/bigZips/

The version/source for indexes can vary by Galaxy server and the administrators have control over index creation and naming. So, if you are working somewhere else and the version is not included in the index name, contact those administrators directly for help.

Thanks! Jen, Galaxy team

ADD COMMENTlink modified 27 days ago • written 27 days ago by Jennifer Hillman Jackson25k
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