Question: NGS Assembly tutorial sample data question
gravatar for jimhu
9 weeks ago by
jimhu20 wrote:

This dataset is used for some of the tutorials on Galaxy Training

The mutantR1 and mutantR2 fastq files are from paired ends, but I can't find information about the fragment size. Anyone know? If not, I may just map the reads and try to figure it out.

assembly tutorial data • 135 views
ADD COMMENTlink modified 9 weeks ago by Jennifer Hillman Jackson25k • written 9 weeks ago by jimhu20
gravatar for Jennifer Hillman Jackson
9 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:


Yes, map the data then use a tool such as NGS: DeepTools > bamPEFragmentSize Estimate the predominant cDNA fragment length from paired-end sequenced BAM files.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 weeks ago by Jennifer Hillman Jackson25k
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