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Question: How To Display Data At Ucsc Main?
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gravatar for Anna Vilborg
5.9 years ago by
Anna Vilborg • 10
Anna Vilborg • 10 wrote:
Dear mailing list, I am new to Galaxy and am going through the tutorials, starting with Galaxy 101. Under point 2.5. "Recovering exon info and displaying data in genome browsers" in the tutorial, there is the option to display data at UCSC. However, I don't have this option, although my history looks otherwise identical to the tutorial one (I am using hg19 as does the tutorial). I can display my data at Ensembl. Does anyone now why I don't get the UCSC option? Best Regards Anna Vilborg
galaxy • 1.2k views
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modified 5.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.9 years ago by Anna Vilborg • 10
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gravatar for Jennifer Hillman Jackson
5.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Anna, Are you still having this issue? Are you running the tutorial on the public Main instance at http://main.g2.bx.psu.edu usegalxy.org)? Please give it another check (our server was recently updated) and if the problem is persistent, share you history with me and I can take a look. To share from the public Main server: while this history is active, at the top of History panel use "Options (gear icon) -> Share or Publish", then generate a share link, copy it, and paste into a return email. Note the dataset that you believe is the one for this step and that should have the link, but does not, and I can provide feedback. Hopefully you have worked this out, but if not we can help, Jen Galaxy team -- Jennifer Jackson http://galaxyproject.org
ADD COMMENT • link written 5.9 years ago by Jennifer Hillman Jackson ♦ 25k
Hi Anna, Thank you for reporting this error. There is currently an issue with displaying the link in the history item for the way we normally display interval datasets at UCSC. However, we have an alternative method available and I have enabled that for now. You will need to refresh the history pane and the link should appear for your datasets. Please let us know if you encounter additional issues. Thanks for using Galaxy, Dan
ADD REPLY • link written 5.9 years ago by Daniel Blankenberg ♦♦ 1.7k
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