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Question: using snpEff via galaxy
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gravatar for mr.donmez.emre
19 months ago by
mr.donmez.emre • 0
mr.donmez.emre • 0 wrote:

ı have A question about Annotating variants with SnpEff following this tutorial (https://galaxyproject.org/tutorials/var_dip/)

I dont have any genome source availabile in galaxy :: what is the reason)?
snp galaxy • 574 views
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modified 19 months ago by Martin Čech ♦♦ 4.9k • written 19 months ago by mr.donmez.emre • 0
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gravatar for Martin Čech
19 months ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Do you mean reference genome? Galaxy does not ship with reference data ready (because e.g. Main Galaxy at usegalaxy.org has 4 TB of it) - so if you are using other/local Galaxy you need to obtain it separately. The best way is using Data Manager tools. https://galaxyproject.org/admin/tools/data-managers/
ADD COMMENT • link written 19 months ago by Martin Čech ♦♦ 4.9k
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