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• Tophat2 Not Working?
  Hello, I've been trying tophat 2 on the public server since last week but I don't get any results...
• Repeated Error With Tophat
  Hello- I am trying to use Galaxy to investigate gene expression differences among datasets. The...
• Tophat jobs exceeding maximum allowed job run time
  Hello, I have a question regarding the mapping of RNA-seq data. I am hitting a wall, because som...
• TopHat jobs failing - Failed to find or download one or more job outputs from remote server.
  Hi, I seem to be running into a problem on the galaxy test server (due to availability of a new g...
• Error message in Tophat
  I am receiving the message "an error occurred setting the metadata for this dataset" on all jobs ...
• An error occurred setting the metadata for this dataset
  Hi Galaxy Team, I've been using TopHat to map my reads and I've received the same error message ...
• Estimating Tophat execution run-time
  I was wondering how long it usually takes to map a read on TopHat? It has been over 12 hours and ...
• error running DESeq2
  Hello, I am running DeSeq2 on tophat Htseq converted files. The job is marked red with an error,...
• Error: Remote job server indicated a problem running or monitoring this job
  Hi I keep running into this error: Remote job server indicated a problem running or monitoring t...
• (No Subject)
  Hello, I am fairly new to galaxy and I am trying to use bowtie2 to map my reads against a custom...
• Unable To Queue Tophat'S Job For Execution
  Hi, The main Galaxy server is failing to schedule tophat's jobs. Giving error: "Unable to queue ...
• Error for running Tophat in GALAXY
  Hello, I was trying to use Tophat of GALAXY (run by my university) to perform mapping of my RNA-S...
• TopHat error message
  Hi, I've been trying to run TopHat on my RNAseq data. I ran my data through FastQC and then Trim...
• Tophat failed to run on RNAseq data?
  Tophat failed to run on my RNAseq data. Before running tophat, I groomed, trimmed, and filtered m...
• TopHat Error Occurred with Dataset
  Hello!  I am attempting to map solid colorspace data with galaxy.  I am running the pipeline as f...
• Problem with data analysis in Galaxy Pipeline (very urgent)
  I've been using TopHat to map my reads and I've received the same error message for the "accepted...
• Local Tophat Error "OSError: [Errno 2] No such file or directory"
  I have created a local Galaxy server to run RNA analysis. I am trying to run TOPHAT on a fastasa...
• Can't auto detect metadata
  Hi, I ran Tophat on my RNAseq data and an error occurred setting the metadata. This has happened ...
• Tophat Gapped-read mapper for RNA-seq data
  1 job has been successfully added to the queue - resulting in the following datasets: 18: Tophat...