Question: wig to bigwig format in galaxy, unavailable genome
0
gravatar for klocko
22 months ago by
klocko • 0
klocko • 0 wrote:

Hi,

I would like to convert a .wig file to a .bigwig file. Should be straightforward, but I am running into the problem that the .wig files I have are from a species not found within your genome database/build list (you have the "crab-eating macaque" genome but not the filamentous fungus model organism Neurospora crassa [used to discover the one-gene one-enzyme Nobel prize by Beadle and Tatum]?).

The create genome help webpage only provides information on how to either choose an Admin-created genome or create your own, but I cannot choose my own genome within the wigtobigwig converter.

Can the admin team add my genome to their list? How do I go about making that request? Or how do I choose my own input genome from my datasets in this program? Thanks.

Andy

software error • 606 views
ADD COMMENT • link • modified 22 months ago • written 22 months ago by klocko • 0
0
gravatar for Jennifer Hillman Jackson
22 months ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Create a Custom Build from your Custom Reference Genome. Then assign it as the database metadata attribute to datasets as needed (click on pencil icon to assign - your Custom Builds are added to the list if genomes).

Some tools use the database assignment to access required genome details.

How-to: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Hope this helps! Jen, Galaxy team

ADD COMMENT • link modified 22 months ago • written 22 months ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for klocko
22 months ago by
klocko • 0
klocko • 0 wrote:

Thank you, Jennifer. Your comments helped me make a "custom build" under the users menu, for which I was then able to use with my programs.

Andy

ADD COMMENT • link written 22 months ago by klocko • 0

Good news, very glad this worked out for you! Jen

ADD REPLY • link written 22 months ago by Jennifer Hillman Jackson ♦ 25k
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