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Question: Chip-Chip Data
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gravatar for Laura Elnitski
12.7 years ago by
Laura Elnitski • 130
Laura Elnitski • 130 wrote:
Hi- the chip-chip data is in wiggle format and galaxy sends this message error, format: wig, database: hg17 Info: smaller, or set a higher output line limit with the filter settings. A search for only chr 7 produces the same error as the whole genome search. Is there any way to do a minimum of one chromosome at a time? Thanks very much, Laura Laura Elnitski, Ph.D. Head Genomic Functional Analysis Section Genome Technology Branch National Human Genome Research Institute National Institutes of Health 5625 Fishers Lane, Rm. 5N-01R Rockville, MD 20852 phone: 301-451-0265 fax: 301-435-6170
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modified 12.7 years ago by James Taylor • 320 • written 12.7 years ago by Laura Elnitski • 130
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gravatar for James Taylor
12.7 years ago by
James Taylor • 320
United States
James Taylor • 320 wrote:
Laura, That message is actually from the table browser. If you select "filter" on the table browser output page you can increase this limit to 10,000,000 rows (wiggle format has one line per data point, so any given chromosome or even encode region will likely have more than 100,000 lines). -- jt
ADD COMMENT • link written 12.7 years ago by James Taylor • 320
Oh- of course--- I was thinking the message was from Galaxy and the use of the filter option in that context wasn't clear to me. Thanks very much! Laura Laura Elnitski, Ph.D. Head Genomic Functional Analysis Section Genome Technology Branch National Human Genome Research Institute National Institutes of Health 5625 Fishers Lane, Rm. 5N-01R Rockville, MD 20852 phone: 301-451-0265 fax: 301-435-6170
ADD REPLY • link written 12.7 years ago by Laura Elnitski • 130
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